---
title: "UPITT Kamboh 1 WGS"
id: "2397"
type: "sample_set"
slug: "snd10012"
published_at: "2021-02-25T21:45:50+00:00"
modified_at: "2023-12-14T22:27:43+00:00"
url: "https://dss.niagads.org/sample-sets/snd10012/"
markdown_url: "https://dss.niagads.org/sample-sets/snd10012.md"
excerpt: "UPITT samples were whole-genome sequenced at New York Genome Center on the HiSeqX machine. BAM files from hg37 build were sent to GCAD for processing on the VCPA1.1 pipeline. 209 samples passed sequencing metrics and quality control."
---

## Description

UPITT samples were whole-genome sequenced at New York Genome Center on the HiSeqX machine. BAM files from hg37 build were sent to GCAD for processing on the VCPA1.1 pipeline. 209 samples passed sequencing metrics and quality control.

## Cohorts

- [University of Pittsburgh (PITT)](https://dss.niagads.org/cohorts/university-of-pittsburgh-pitt/)

## Sex

### Total number of samples: 209

Female12157.9 %

Male8842.1 %

## Race

### Total number of samples: 209

| White | 209 |
| --- | --- |

## Ethnicity

### Total number of samples: 209

Not Hispanic or Latino

209

100.0%

## Diagnosis

### Total number of samples: 209

| AD |  |  |
| --- | --- | --- |
| Case | 209 | 100.0% |

## APOE

### Total number of samples: 209

- 234 (1.9%)
- 248 (3.8%)
- 3343 (20.6%)
- 34125 (59.8%)
- 4429 (13.9%)