---
title: "NACC Genentech WGS"
id: "2402"
type: "sample_set"
slug: "snd10013"
published_at: "2021-02-24T01:00:15+00:00"
modified_at: "2023-12-14T22:28:12+00:00"
url: "https://dss.niagads.org/sample-sets/snd10013/"
markdown_url: "https://dss.niagads.org/sample-sets/snd10013.md"
excerpt: "NACC Genentech WGS samples were whole-genome sequenced at Illumina on the HiSeq2000 machine. Samples in either format (BAM files from hg37 build and FASTQ files) were sent to GCAD for processing on the VCPA1.1 pipeline. 137 samples passed sequencing metrics..."
---

## Description

NACC Genentech WGS samples were whole-genome sequenced at Illumina on the HiSeq2000 machine. Samples in either format (BAM files from hg37 build and FASTQ files) were sent to GCAD for processing on the VCPA1.1 pipeline. 137 samples passed sequencing metrics and quality control.

## Cohorts

- [NIA Alzheimer's Disease Research Centers (ADRC)](https://dss.niagads.org/cohorts/nia-alzheimers-disease-research-centers-adrc/)

## Sex

### Total number of samples: 137

Female5640.9 %

Male8159.1 %

## Race

### Total number of samples: 137

| White | 137 |
| --- | --- |

## Ethnicity

### Total number of samples: 137

Not Hispanic or Latino

137

100.0%

## Diagnosis

### Total number of samples: 137

| AD |  |  |
| --- | --- | --- |
| Control | 6 | 4.4% |
| Case | 5 | 3.6% |
| Unknown | 126 | 92.0% |

## APOE

### Total number of samples: 137

- 331 (0.7%)
- 3479 (57.7%)
- 4457 (41.6%)