---
title: "Cache County WGS"
id: "2408"
type: "sample_set"
slug: "snd10014"
published_at: "2021-02-24T01:05:10+00:00"
modified_at: "2023-12-14T22:28:44+00:00"
url: "https://dss.niagads.org/sample-sets/snd10014/"
markdown_url: "https://dss.niagads.org/sample-sets/snd10014.md"
excerpt: "Cache County samples were whole-genome sequenced at Illumina on the HiSeq2000 machine. BAM from hg37 build were sent to GCAD for processing on the VCPA1.1 pipeline. 207 samples passed sequencing metrics and quality control."
---

## Description

Cache County samples were whole-genome sequenced at Illumina on the HiSeq2000 machine. BAM from hg37 build were sent to GCAD for processing on the VCPA1.1 pipeline. 207 samples passed sequencing metrics and quality control.

## Cohorts

- [Cache County Study (CCS)](https://dss.niagads.org/cohorts/cache-county-study-ccs/)

## Sex

### Total number of samples: 207

Female12660.9 %

Male8139.1 %

## Race

### Total number of samples: 207

| White | 207 |
| --- | --- |

## Ethnicity

### Total number of samples: 207

Not Hispanic or Latino

207

100.0%

## Diagnosis

### Total number of samples: 207

| AD |  |  |
| --- | --- | --- |
| Control | 207 | 100.0% |

## APOE

### Total number of samples: 207

- 34195 (94.2%)
- 4412 (5.8%)