---
title: "PSP-UCLA WGS"
id: "2421"
type: "sample_set"
slug: "snd10017"
published_at: "2021-02-25T03:05:59+00:00"
modified_at: "2023-12-14T22:30:04+00:00"
url: "https://dss.niagads.org/sample-sets/snd10017/"
markdown_url: "https://dss.niagads.org/sample-sets/snd10017.md"
excerpt: "PSP UCLA samples were whole-genome sequenced at Illumina/NYGC on the HiSeq2000/2500 machine. BAM files from hg37 build were sent to GCAD for processing on the VCPA1.1 pipeline. 408 samples passed sequencing metrics and quality control."
---

## Description

PSP UCLA samples were whole-genome sequenced at Illumina/NYGC on the HiSeq2000/2500 machine. BAM files from hg37 build were sent to GCAD for processing on the VCPA1.1 pipeline. 408 samples passed sequencing metrics and quality control.

## Cohorts

- [Progressive Supranuclear Palsy at the University of California, Los Angeles (PSP UCLA)](https://dss.niagads.org/cohorts/progressive-supranuclear-palsy-at-the-university-of-california-los-angeles-psp-ucla/)

## Sex

### Total number of samples: 408

Female20149.3 %

Male20750.7 %

## Race

### Total number of samples: 408

| White | 408 |
| --- | --- |

## Diagnosis

### Total number of samples: 408

| PSP |  |  |
| --- | --- | --- |
| Control | 128 | 31.4% |
| Case | 280 | 68.6% |