---
title: "ADGC-TARCC WGS"
id: "3860"
type: "sample_set"
slug: "snd10030"
published_at: "2022-09-15T19:16:01+00:00"
modified_at: "2023-12-14T22:31:09+00:00"
url: "https://dss.niagads.org/sample-sets/snd10030/"
markdown_url: "https://dss.niagads.org/sample-sets/snd10030.md"
excerpt: "The TARCC samples were sequenced at USUHS on the Novaseq machine. 1,018 samples were sequenced and FASTQ files were sent to GCAD for processing on the VCPA 1.1 pipeline. A total of 1,017 samples passed sequencing metrics and quality control..."
---

## Description

The TARCC samples were sequenced at USUHS on the Novaseq machine. 1,018 samples were sequenced and FASTQ files were sent to GCAD for processing on the VCPA 1.1 pipeline. A total of 1,017 samples passed sequencing metrics and quality control checks.

## Cohorts

- [Texas Alzheimer’s Research and Care Consortium (TARCC)](https://dss.niagads.org/cohorts/texas-alzheimers-research-and-care-consortium-tarcc/)

## Sex

### Total number of samples: 1,017

Female70569.3 %

Male31230.7 %

## Race

### Total number of samples: 1,017

| American Indian/Alaska Native | 5 |
| --- | --- |
| Asian | 44 |
| White | 968 |

## Ethnicity

### Total number of samples: 1,017

Hispanic or Latino

1,017

100.0%

## Diagnosis

### Total number of samples: 1,017

| AD |  |  |
| --- | --- | --- |
| Control | 581 | 57.1% |
| Case | 176 | 17.3% |
| Unknown | 260 | 25.6% |

## APOE

### Total number of samples: 1,017

- 221 (0.1%)
- 2359 (5.8%)
- 249 (0.9%)
- 33729 (71.7%)
- 34197 (19.4%)
- 4422 (2.2%)