---
title: "ADGC ADC Round 1"
id: "6148"
type: "sample_set"
slug: "snd10058"
published_at: "2024-02-07T21:47:49+00:00"
modified_at: "2024-02-07T21:47:50+00:00"
url: "https://dss.niagads.org/sample-sets/snd10058/"
markdown_url: "https://dss.niagads.org/sample-sets/snd10058.md"
excerpt: "The ADC1 sample set was genotyped by the Center for Applied Genomics at the Children’s Hospital of Philadelphia using the Illumina Infinium HD Human660W-Quad (Human660W-Quad_v1_A) BeadChip which captures genotype data on 657,366 genomic SNPs. The standard Alzheimer’s Disease Genetics Consortium..."
---

## Description

The ADC1 sample set was genotyped by the Center for Applied Genomics at the Children’s Hospital of Philadelphia using the Illumina Infinium HD Human660W-Quad (Human660W-Quad_v1_A) BeadChip which captures genotype data on 657,366 genomic SNPs. The standard Alzheimer’s Disease Genetics Consortium (ADGC) quality control pipeline (Naj et al. 2011) was applied to this GWAS dataset.

## Cohorts

- [NIA Alzheimer's Disease Research Centers (ADRC)](https://dss.niagads.org/cohorts/nia-alzheimers-disease-research-centers-adrc/)

## Sex

### Total number of samples: 2,768

Female1,51754.8 %

Male1,25045.2 %

Sex not reported: 1

## Race

### Total number of samples: 2,768

| American Indian/Alaska Native | 3 |
| --- | --- |
| Asian | 6 |
| Black or African American | 82 |
| White | 632 |
| Other | 9 |
| NA | 2,036 |

## Ethnicity

### Total number of samples: 2,768

Not Hispanic or Latino

690

24.9%

Hispanic or Latino

39

1.4%

Not Applicable/Not Available

2,039

73.7%

## Diagnosis

### Total number of samples: 2,768

| AD |  |  |
| --- | --- | --- |
| Control | 403 | 14.6% |
| Case | 95 | 3.4% |
| Unknown | 2,270 | 82.0% |

## APOE

### Total number of samples: 2,768

- 2210 (0.4%)
- 23165 (6.0%)
- 2459 (2.1%)
- 331,059 (38.3%)
- 341,127 (40.7%)
- 44331 (12.0%)
- NA17 (0.6%)