---
title: "Pitt-Kamboh-2 WGS"
id: "7359"
type: "sample_set"
slug: "snd10091"
published_at: "2024-11-27T16:01:49+00:00"
modified_at: "2024-11-27T16:01:50+00:00"
url: "https://dss.niagads.org/sample-sets/snd10091/"
markdown_url: "https://dss.niagads.org/sample-sets/snd10091.md"
excerpt: "209 samples of the PITT cohort underwent whole-genome sequencing at NYGC using the Illumina HiSeqX platform. The resulting BAM files were sent to GCAD for processing via the VCPA1.1 pipeline. A total of 207 samples passed sequencing metrics and quality..."
---

## Description

209 samples of the PITT cohort underwent whole-genome sequencing at NYGC using the Illumina HiSeqX platform. The resulting BAM files were sent to GCAD for processing via the VCPA1.1 pipeline. A total of 207 samples passed sequencing metrics and quality control checks.

## Cohorts

- [University of Pittsburgh (PITT)](https://dss.niagads.org/cohorts/university-of-pittsburgh-pitt/)

## Sex

### Total number of samples: 207

Female13665.7 %

Male7134.3 %

## Race

### Total number of samples: 207

| White | 207 |
| --- | --- |

## Ethnicity

### Total number of samples: 207

Not Hispanic or Latino

207

100.0%

## Diagnosis

### Total number of samples: 207

| AD |  |  |
| --- | --- | --- |
| Case | 207 | 100.0% |

## APOE

### Total number of samples: 207

- 237 (3.4%)
- 245 (2.4%)
- 3350 (24.2%)
- 34120 (58.0%)
- 4425 (12.1%)