---
title: "GARD1 WGS"
id: "7383"
type: "sample_set"
slug: "snd10092"
published_at: "2024-11-27T15:56:08+00:00"
modified_at: "2024-11-27T15:56:09+00:00"
url: "https://dss.niagads.org/sample-sets/snd10092/"
markdown_url: "https://dss.niagads.org/sample-sets/snd10092.md"
excerpt: "This sample dataset was collected from the GARD cohort. 2,002 participants and 5 replicates were sequenced by DNALINK using Illumina NovaSeq 6000 sequencing technology. FASTQ and CRAM files were sent to GCAD. A total of 2,000 samples passed sequencing metrics..."
---

## Description

This sample dataset was collected from the GARD cohort. 2,002 participants and 5 replicates were sequenced by DNALINK using Illumina NovaSeq 6000 sequencing technology. FASTQ and CRAM files were sent to GCAD. A total of 2,000 samples passed sequencing metrics and quality control checks.

## Cohorts

- [Estudio Familiar de Influencia Genetica en Alzheimer (EFIGA)](https://dss.niagads.org/cohorts/estudio-familiar-de-influencia-genetica-en-alzheimer-efiga/)
- [Gwangju Alzheimer's and Related Dementia (GARD)](https://dss.niagads.org/cohorts/gwangju-alzheimers-and-related-dementia-gard/)
- [National Centralized Repository for Alzheimer’s Disease and Related Dementias Family (NCRAD Family)](https://dss.niagads.org/cohorts/national-centralized-repository-for-alzheimers-disease-and-related-dementias-family-ncrad-family/)

## Sex

### Total number of samples: 2,000

Female1,07853.9 %

Male92246.1 %

## Race

### Total number of samples: 2,000

| Asian | 1,995 |
| --- | --- |
| Black or African American | 1 |
| Other | 4 |

## Ethnicity

### Total number of samples: 2,000

Not Hispanic or Latino

1,996

99.8%

Hispanic or Latino

4

0.2%

## Diagnosis

### Total number of samples: 2,000

| AD |  |  |
| --- | --- | --- |
| Control | 1,007 | 50.4% |
| Case | 791 | 39.6% |
| Other | 1 | 0.1% |
| Unknown | 201 | 10.1% |

## APOE

### Total number of samples: 2,000

- 224 (0.2%)
- 23149 (7.5%)
- 2441 (2.1%)
- 331,007 (50.4%)
- 34699 (35.0%)
- 44100 (5.0%)