---
title: "AZAPOE WGS"
id: "7377"
type: "sample_set"
slug: "snd10097"
published_at: "2024-11-27T15:58:06+00:00"
modified_at: "2024-11-27T15:58:07+00:00"
url: "https://dss.niagads.org/sample-sets/snd10097/"
markdown_url: "https://dss.niagads.org/sample-sets/snd10097.md"
excerpt: "A total of 88 samples were sequenced at USUHS using the NovaSeq platform. The FASTQ files were sent to GCAD for processing through the VCPA1.1 pipeline. All 88 samples passed sequencing metrics and quality control checks."
---

## Description

A total of 88 samples were sequenced at USUHS using the NovaSeq platform. The FASTQ files were sent to GCAD for processing through the VCPA1.1 pipeline. All 88 samples passed sequencing metrics and quality control checks.

## Cohorts

- [Arizona APOE Cohort Study](https://dss.niagads.org/cohorts/banner-health-apoe-longitudinal/)

## Sex

### Total number of samples: 88

Female6068.2 %

Male2831.8 %

## Race

### Total number of samples: 88

| Black or African American | 1 |
| --- | --- |
| White | 86 |
| Other | 1 |

## Ethnicity

### Total number of samples: 88

Not Hispanic or Latino

80

90.9%

Hispanic or Latino

8

9.1%

## Diagnosis

### Total number of samples: 88

| AD |  |  |
| --- | --- | --- |
| Control | 88 | 100.0% |

## APOE

### Total number of samples: 88

- 224 (4.5%)
- 2311 (12.5%)
- 248 (9.1%)
- 3326 (29.5%)
- 3418 (20.5%)
- 4421 (23.9%)