---
title: "UAB-ADRC WGS"
id: "7371"
type: "sample_set"
slug: "snd10099"
published_at: "2024-11-27T15:59:24+00:00"
modified_at: "2024-11-27T15:59:25+00:00"
url: "https://dss.niagads.org/sample-sets/snd10099/"
markdown_url: "https://dss.niagads.org/sample-sets/snd10099.md"
excerpt: "A total of 17 samples were sequenced at HudsonAlpha Institute for Biotechnology using the NovaSeq platform. The FASTQ files were sent to GCAD for processing through the VCPA1.1 pipeline. A total of 17 samples passed sequencing metrics and quality control..."
---

## Description

A total of 17 samples were sequenced at HudsonAlpha Institute for Biotechnology using the NovaSeq platform. The FASTQ files were sent to GCAD for processing through the VCPA1.1 pipeline. A total of 17 samples passed sequencing metrics and quality control checks.

## Cohorts

- [The University of Alabama Birmingham Alzheimer's Disease Research Center (UAB_ADRC)](https://dss.niagads.org/cohorts/the-university-of-alabama-birmingham-alzheimers-disease-research-center-uab_adrc/)

## Sex

### Total number of samples: 17

Female1270.6 %

Male529.4 %

## Race

### Total number of samples: 17

| Black or African American | 9 |
| --- | --- |
| White | 8 |

## Ethnicity

### Total number of samples: 17

Not Hispanic or Latino

17

100.0%

## Diagnosis

### Total number of samples: 17

| AD |  |  |
| --- | --- | --- |
| Control | 10 | 58.8% |
| Case | 2 | 11.8% |
| Unknown | 5 | 29.4% |

## APOE

### Total number of samples: 17

- 232 (11.8%)
- 241 (5.9%)
- 336 (35.3%)
- 346 (35.3%)
- 442 (11.8%)