---
title: "Amyloid-Pitt WGS"
id: "7365"
type: "sample_set"
slug: "snd10100"
published_at: "2024-11-27T16:00:27+00:00"
modified_at: "2024-11-27T16:00:27+00:00"
url: "https://dss.niagads.org/sample-sets/snd10100/"
markdown_url: "https://dss.niagads.org/sample-sets/snd10100.md"
excerpt: "A total of 1,195 samples were sequenced at MGI and NYGC on the NovaSeq6000 platform. 498 bam and 697 cram files were sent to GCAD for processing. A total of 798 samples passed sequencing metrics and quality control checks (351..."
---

## Description

A total of 1,195 samples were sequenced at MGI and NYGC on the NovaSeq6000 platform. 498 bam and 697 cram files were sent to GCAD for processing. A total of 798 samples passed sequencing metrics and quality control checks (351 samples were not included in this release due to missing consent).

## Cohorts

- [Brain Amyloid Cognitive Normal Elders Study (BACNE)](https://dss.niagads.org/cohorts/brain-amyloid-cognitive-normal-elders-study/)
- [Heart SCORE](https://dss.niagads.org/cohorts/heart-score/)
- [Human Connectome Project](https://dss.niagads.org/cohorts/human-connectome-project/)
- [The Ginkgo Evaluation of Memory Study](https://dss.niagads.org/cohorts/the-ginkgo-evaluation-of-memory-study/)
- [The Monongahela-Youghiogheny Healthy Aging Team (MYHAT)](https://dss.niagads.org/cohorts/the-monongahela-youghiogheny-healthy-aging-team-myhat/)
- [University of Pittsburgh (PITT)](https://dss.niagads.org/cohorts/university-of-pittsburgh-pitt/)

## Sex

### Total number of samples: 798

Female44655.9 %

Male35244.1 %

## Race

### Total number of samples: 798

| Asian | 7 |
| --- | --- |
| Black or African American | 153 |
| White | 637 |
| NA | 1 |

## Ethnicity

### Total number of samples: 798

Not Hispanic or Latino

798

100.0%

## Diagnosis

### Total number of samples: 798

| AD |  |  |
| --- | --- | --- |
| Control | 698 | 87.5% |
| Case | 70 | 8.8% |
| Unknown | 30 | 3.8% |

## APOE

### Total number of samples: 798

- 226 (0.8%)
- 2397 (12.2%)
- 2419 (2.4%)
- 33459 (57.5%)
- 34184 (23.1%)
- 4433 (4.1%)