---
title: "HABS-HD1 WGS"
id: "7367"
type: "sample_set"
slug: "snd10102"
published_at: "2024-11-27T15:59:57+00:00"
modified_at: "2024-11-27T15:59:58+00:00"
url: "https://dss.niagads.org/sample-sets/snd10102/"
markdown_url: "https://dss.niagads.org/sample-sets/snd10102.md"
excerpt: "A total of 1,362 HABS cohort samples were sequenced at USUHS using the NovaSeq and NovaSeqX platforms. The FASTQ files were sent to GCAD for processing through the VCPA1.1 pipeline. A total of 1,359 samples passed sequencing metrics and quality..."
---

## Description

A total of 1,362 HABS cohort samples were sequenced at USUHS using the NovaSeq and NovaSeqX platforms. The FASTQ files were sent to GCAD for processing through the VCPA1.1 pipeline. A total of 1,359 samples passed sequencing metrics and quality control checks.

## Cohorts

- [Health and Aging Brain Study - Health Disparities (HABS-HD)](https://dss.niagads.org/cohorts/health-and-aging-brain-study-health-disparities-habs-hd/)

## Sex

### Total number of samples: 1,359

Female84061.8 %

Male51938.2 %

## Race

### Total number of samples: 1,359

| Black or African American | 171 |
| --- | --- |
| White | 1,174 |
| NA | 14 |

## Ethnicity

### Total number of samples: 1,359

Not Hispanic or Latino

794

58.4%

Hispanic or Latino

560

41.2%

Not Applicable/Not Available

5

0.4%

## Diagnosis

### Total number of samples: 1,359

| AD |  |  |
| --- | --- | --- |
| Unknown | 1,359 | 100.0% |

## APOE

### Total number of samples: 1,359

- 225 (0.4%)
- 23132 (9.7%)
- 2423 (1.7%)
- 33869 (63.9%)
- 34296 (21.8%)
- 4427 (2.0%)
- NA7 (0.5%)