---
title: "APOEExtremes1 WGS"
id: "7361"
type: "sample_set"
slug: "snd10103"
published_at: "2024-11-27T16:01:18+00:00"
modified_at: "2024-11-27T16:01:19+00:00"
url: "https://dss.niagads.org/sample-sets/snd10103/"
markdown_url: "https://dss.niagads.org/sample-sets/snd10103.md"
excerpt: "27 samples were sequenced at Genentech on Illumina HiSeqX and Illumina platforms. CRAM files were sent to GCAD for processing. A total of 21 samples passed sequencing metrics and quality control checks."
---

## Description

27 samples were sequenced at Genentech on Illumina HiSeqX and Illumina platforms. CRAM files were sent to GCAD for processing. A total of 21 samples passed sequencing metrics and quality control checks.

## Cohorts

- [Knight Alzheimer’s Disease Research Center (KGAD)](https://dss.niagads.org/cohorts/knight-alzheimers-disease-research-center-kgad/)
- [National Centralized Repository for Alzheimer’s Disease and Related Dementias Family (NCRAD Family)](https://dss.niagads.org/cohorts/national-centralized-repository-for-alzheimers-disease-and-related-dementias-family-ncrad-family/)
- [National Institute of Aging Alzheimer’s Disease Family Based Study (NIA AD-FBS)](https://dss.niagads.org/cohorts/national-institute-on-aging-late-onset-of-alzheimers-disease-family-nia-load/)

## Sex

### Total number of samples: 21

Female1466.7 %

Male733.3 %

## Race

### Total number of samples: 21

| White | 20 |
| --- | --- |
| Other | 1 |

## Ethnicity

### Total number of samples: 21

Not Hispanic or Latino

8

38.1%

Hispanic or Latino

4

19.0%

Not Applicable/Not Available

9

42.9%

## Diagnosis

### Total number of samples: 21

| AD |  |  |
| --- | --- | --- |
| Control | 2 | 9.5% |
| Case | 18 | 85.7% |
| Other | 1 | 4.8% |

## APOE

### Total number of samples: 21

- 3411 (52.4%)
- 4410 (47.6%)