Description
FASe_WGS samples were whole-genome sequenced at Broad either on the HiSeqX or HiSeq2000/2500 machine. Samples in either format (BAM files from hg37 build and FASTQ files) were sent to GCAD for processing on the VCPA1.1 pipeline. 91 samples passed sequencing metrics and quality control.
Sex
Total number of samples: 91
Female 56 61.5 %
Male 35 38.5 %
Race
Total number of samples: 91
| American Indian/Alaska Native | 2 |
| Native Hawaiian or Other Pacific Islander | 1 |
| White | 88 |
Ethnicity
Total number of samples: 91
Not Hispanic or Latino
90
98.9%
Hispanic or Latino
1
1.1%
Diagnosis
Total number of samples: 91
| AD | ||
|---|---|---|
| Control | 13 | 14.3% |
| Case | 74 | 81.3% |
| Other | 1 | 1.1% |
| Unknown | 3 | 3.3% |
APOE
Total number of samples: 91
- 235 (5.5%)
- 338 (8.8%)
- 3433 (36.3%)
- 4445 (49.5%)