Description
Knight ADRC samples were whole-genome sequenced at Broad/Genentech either on the HiSeqX or HiSeq2000/2500 machine. Samples in either format (BAM files from hg37 build and FASTQ files) were sent to GCAD for processing on the VCPA1.1 pipeline. 77 samples passed sequencing metrics and quality control.
Sex
Total number of samples: 77
Female 45 58.4 %
Male 32 41.6 %
Race
Total number of samples: 77
| Native Hawaiian or Other Pacific Islander | 1 |
| Black or African American | 5 |
| White | 71 |
Ethnicity
Total number of samples: 77
Not Hispanic or Latino
75
97.4%
Hispanic or Latino
1
1.3%
Not Applicable/Not Available
1
1.3%
Diagnosis
Total number of samples: 77
| AD | ||
|---|---|---|
| Control | 14 | 18.2% |
| Case | 54 | 70.1% |
| Unknown | 9 | 11.7% |
APOE
Total number of samples: 77
- 231 (1.3%)
- 3453 (68.8%)
- 4423 (29.9%)