Knight ADRC samples were whole-genome sequenced at Broad/Genentech either on the HiSeqX or HiSeq2000/2500 machine. Samples in either format (BAM files from hg37 build and FASTQ files) were sent to GCAD for processing on the VCPA1.1 pipeline. 77 samples passed sequencing metrics and quality control.

Total number of samples: 77

Female 45 58.4 %
Male 32 41.6 %

Total number of samples: 77

Native Hawaiian or Other Pacific Islander1
Black or African American5
White71

Total number of samples: 77

Not Hispanic or Latino
76
98.7%
Hispanic or Latino
1
1.3%

Total number of samples: 77

Disease
AD77100.0%
Study Specific Diagnosis
Control1418.2%
Case5470.1%
Unknown911.7%

Total number of samples: 77

  • 231 (1.3%)
  • 3453 (68.8%)
  • 4423 (29.9%)