Description
The EOAD samples were sequenced at USUHS on the NovaSeq machine. 3176 samples were sequenced and FASTQ files were sent to GCAD for processing on the VCPA 1.1 pipeline. A total of 3,132 samples passed sequencing metrics and quality control checks.
Sex
Total number of samples: 3,132
Female 1,773 56.6 %
Male 1,359 43.4 %
Race
Total number of samples: 3,132
| American Indian/Alaska Native | 29 |
| Asian | 57 |
| Native Hawaiian or Other Pacific Islander | 4 |
| Black or African American | 209 |
| White | 2,755 |
| Other | 51 |
| NA | 27 |
Ethnicity
Total number of samples: 3,132
Not Hispanic or Latino
2,500
79.8%
Hispanic or Latino
298
9.5%
Not Applicable/Not Available
334
10.7%
Diagnosis
Total number of samples: 3,618
| AD | ||
|---|---|---|
| Control | 739 | 20.4% |
| Case | 1,641 | 45.4% |
| Other | 447 | 12.4% |
| Unknown | 791 | 21.9% |
APOE
Total number of samples: 3,132
- 2214 (0.4%)
- 23296 (9.5%)
- 2470 (2.2%)
- 331,205 (38.5%)
- 341,172 (37.4%)
- 44355 (11.3%)
- NA20 (0.6%)