Description
A total of 237 WHICAP cohort samples were sequenced at NYGC and USUHS using the Illumina HiSeqX platform. The BAM files were sent to GCAD for processing through the VCPA1.1 pipeline. A total of 232 samples passed sequencing metrics and quality control checks.
Sex
Total number of samples: 232
Female 172 74.1 %
Male 60 25.9 %
Race
Total number of samples: 232
| Black or African American | 169 |
| White | 15 |
| Other | 48 |
Ethnicity
Total number of samples: 232
Not Hispanic or Latino
184
79.3%
Hispanic or Latino
48
20.7%
Diagnosis
Total number of samples: 267
| AD | ||
|---|---|---|
| Control | 222 | 83.1% |
| Case | 12 | 4.5% |
| Unknown | 3 | 1.1% |
| 30 | 11.2% |
APOE
Total number of samples: 232
- 2210 (4.3%)
- 2329 (12.5%)
- 2424 (10.3%)
- 3375 (32.3%)
- 3478 (33.6%)
- 4416 (6.9%)